Java Security Manager
So, I researched strategies that would ensure the Java application process checked the trustworthiness of the components used by the new Java application process. Java 2 includes a Security Manager feature which is responsible for restricting access to resources based on trust relationships established with Principals. To ensure that all Java application components used in the Java application process are trusted by the user (or their system administrator), I added a property to the Java command line invoking the default Java Security Manager:
java -Djava.security.manager -jar foo.jar
This ensures that all application resources must be trusted by the user, with that trust usually being established by way of digitally-signed JARs. Effectively, the Java application process will be run with the same restrictions placed on a Java Applet running in a web browser.